Tutorial: Running MPI Programs on Hadoop Cluster

--D. Thiebaut (talk) 13:57, 15 October 2013 (EDT)
Revised: --D. Thiebaut (talk) 12:02, 15 March 2017 (EDT)

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Setup Password-Less ssh to the Hadoop cluster

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Setup Aliases

• This section is not required, but will save you a lot of typing.
• Edit your .bashrc file

 emacs -nw ~/.bashrc 

• and add these 3 lines at the end, where you will replace yourusername by your actual user name.

alias hadoop02='ssh -Y yourusername@hadoop02.dyndns.org'
alias hadoop03='ssh -Y yourusername@hadoop03.dyndns.org'
alias hadoop04='ssh -Y yourusername@hadoop04.dyndns.org'

• Then tell bash to re-read the .bashrc file, since we just modified it. This way bash will learn the 3 new aliases we've defined.

source ~/.bashrc

• Now you should be able to connect to the servers using their name only. For example:

hadoop02      

this should connect you to hadoop02 directly.

• Exit from hadoop02, and try the same thing for hadoop03, and hadoop04.
• Note, if you like even shorter commands, you could modify the .bashrc file and make the aliases h2, h3, and h4... Up to you.

Test MPI

MPI should already be installed, and your account ready to access it. To verify this, create a simple MPI "Hello World!" program, compile it, and run it.

// hello.c
// A simple hello world MPI program that can be run 
// on any number of computers
#include <mpi.h>
#include <stdio.h>

int main( int argc, char *argv[] ) {
  int rank, size, nameLen;
  char hostName[80];

  MPI_Init( &argc, &argv);   /* start MPI */
  MPI_Comm_rank( MPI_COMM_WORLD, &rank );   /* get current process Id */
  MPI_Comm_size( MPI_COMM_WORLD, &size );   /* get # of processes */
  MPI_Get_processor_name( hostName, &nameLen);

  printf( "Hello from Process %d of %d on Host %s\n", rank, size, hostName );
  MPI_Finalize();
  return 0;
}

• Compile and Run

mpicc -o hello helloWorld.c
mpirun -np 2 ./hello
Hello from Process 1 of 2 on Host Hadoop01
Hello from Process 0 of 2 on Host Hadoop01

• If you see the two lines starting with "Hello world" on your screen, MPI was successfully installed on your system!

Configuration for Running On Multiple Servers

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