Difference between revisions of "Csc334 DT lab Ideas"
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| + | * Get familiar with Proce55ing [[CSC334_Lab0| Lab #0]] | ||
* Get a DNA sequence [[CSC334_Lab1| Lab #1]] | * Get a DNA sequence [[CSC334_Lab1| Lab #1]] | ||
* Get a protein sequence [[CSC334_Lab2 | Lab #2]] | * Get a protein sequence [[CSC334_Lab2 | Lab #2]] | ||
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* BLAST lab: take a sequence (protein and/or DNA) and find other sequences that are close to it | * BLAST lab: take a sequence (protein and/or DNA) and find other sequences that are close to it | ||
* given N sequences that overlap, find the best way in which they form a long sequence. Use processing and a circle approach to represent them | * given N sequences that overlap, find the best way in which they form a long sequence. Use processing and a circle approach to represent them | ||
| − | * display alignment of two sequences | + | * display alignment of two sequences [[CSC334_Lab3| Lab #3]] |
** limit to end to end overlapping | ** limit to end to end overlapping | ||
** from output of blast | ** from output of blast | ||
Revision as of 09:21, 24 July 2008
- Get familiar with Proce55ing Lab #0
- Get a DNA sequence Lab #1
- Get a protein sequence Lab #2
- given a series of nucleotides, find and display the 6 reading frames
- finding repeats within a sequence
- BLAST lab: take a sequence (protein and/or DNA) and find other sequences that are close to it
- given N sequences that overlap, find the best way in which they form a long sequence. Use processing and a circle approach to represent them
- display alignment of two sequences Lab #3
- limit to end to end overlapping
- from output of blast
- from result of computing local alignment
- Orfing: (page 146) Finding a sequence longer than some number (proteins are typically 350 residues in length, and at least 100 minimum), between a start (ATG), and a stop (TAA, TAG, TGA) sequence.
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