Difference between revisions of "CSC334 Lab5"
(New page: Back to CSC334 Lab Page <hr /><br /> =Finding Repeats using a Web-Based Repeat Finder= In this lab we perform a similar operation as the one we did in CSC334_Lab4,...) |
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* Enter your favorite DNA sequence in the left text area, and click on '''Copy DNA1->DNA2''' | * Enter your favorite DNA sequence in the left text area, and click on '''Copy DNA1->DNA2''' | ||
[[Image:DNA_DotPlot.png]] | [[Image:DNA_DotPlot.png]] | ||
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| + | * Select window sizes that are odd number, and generate different plots. Observe that you observe similar data as what you obtained in [[Csc334_Lab4 | Lab #4]] if you did this lab. | ||
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| + | * Click on the segments in the dot plot, and observe that you can get some idea of the location of the repeating segment's locations in the DNA sequence | ||
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| + | [[Image:DNA_DotPlot2.png]] | ||
Revision as of 16:07, 24 July 2008
Finding Repeats using a Web-Based Repeat Finder
In this lab we perform a similar operation as the one we did in CSC334_Lab4, but this time using a Web service.
Make sure you have a FASTA sequence available, and follow these steps
- Point your browser to the Molecular Toolkit at Colorado State U.
- Select the Dot Plot option
- Enter your favorite DNA sequence in the left text area, and click on Copy DNA1->DNA2
- Select window sizes that are odd number, and generate different plots. Observe that you observe similar data as what you obtained in Lab #4 if you did this lab.
- Click on the segments in the dot plot, and observe that you can get some idea of the location of the repeating segment's locations in the DNA sequence
Back to CSC334 Lab Page
