Difference between revisions of "Csc334 Labs"
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| − | [[ | + | <meta name="keywords" content="computer science, bioinformatics, DNA, CSC334, Lab" /> |
| + | <meta name="description" content="DNA Sequence Logo Lab" /> | ||
| + | <meta name="title" content="Bioinformatics Lab" /> | ||
| + | <meta name="abstract" content="DNA RNA Labs" /> | ||
| + | <meta name="author" content="thiebaut at cs.smith.edu" /> | ||
| + | |||
| + | [[Csc334_Labs | Back to CSC334 Homepage]] | ||
<hr> | <hr> | ||
| − | = | + | =BioInformatics Labs= |
| − | * [[CSC334_Lab0 | Lab #0]]: Introduction to Proce55ing | + | * [[CSC334_Lab0 | Lab #0]]: Introduction to '''Proce55ing''' |
| − | * [[CSC334_Lab1 | Lab #1]]: Retrieving DNA sequence from database | + | * [[CSC334_Lab1 | Lab #1]]: Retrieving '''DNA''' sequence from database |
| − | * [[CSC334_Lab2 | Lab #2]]: Retrieving protein sequence from database | + | * [[CSC334_Lab2 | Lab #2]]: Retrieving '''protein''' sequence from database |
| − | * [[CSC334_Lab3 | Lab #3]]: Aligning sequences in Proce55ing | + | * [[CSC334_Lab3 | Lab #3]]: '''Aligning''' sequences in Proce55ing |
| − | * [[CSC334_Lab4 | Lab #4]]: Finding repeats in DNA sequences | + | * [[CSC334_Lab4 | Lab #4]]: Finding '''repeats''' in DNA sequences with Proce55ing |
| + | * [[CSC334_Lab5 | Lab #5]]: Finding '''repeats''' in DNA sequences using a Web-server | ||
| + | * [[CSC334_Lab6 | Lab #6]]: Playing with '''FoldIt'''! | ||
| + | * [[CSC334_lab7 | Lab #7]]: '''Sequence Logos''' with ''Proce55ing'' | ||
| + | * [[CSC334_Lab8 | Lab #8]]: '''Sequence Logos''' on the Web | ||
| + | * [[CSC334_Lab9 | Lab #9]]: '''Where/How do I get proteins?''' | ||
| + | * [[CSC334_Lab10 | Lab #10]]: Finding the '''secondary structure''' of a protein | ||
| − | =Miscellaneous Links= | + | =Miscellaneous Links and Resources= |
| + | * [[CSC334_EColi | E Coli]] sequence in FASTA format | ||
* A good tutorial [[Image:ProcessingTutorial.pdf | Link ]] on Processing by Josh Nimoy, from NYU. | * A good tutorial [[Image:ProcessingTutorial.pdf | Link ]] on Processing by Josh Nimoy, from NYU. | ||
<hr> | <hr> | ||
[[CSC334 | CSC334 Home]] | [[CSC334 | CSC334 Home]] | ||
Latest revision as of 11:07, 30 September 2008
<meta name="keywords" content="computer science, bioinformatics, DNA, CSC334, Lab" /> <meta name="description" content="DNA Sequence Logo Lab" /> <meta name="title" content="Bioinformatics Lab" /> <meta name="abstract" content="DNA RNA Labs" /> <meta name="author" content="thiebaut at cs.smith.edu" />
BioInformatics Labs
- Lab #0: Introduction to Proce55ing
- Lab #1: Retrieving DNA sequence from database
- Lab #2: Retrieving protein sequence from database
- Lab #3: Aligning sequences in Proce55ing
- Lab #4: Finding repeats in DNA sequences with Proce55ing
- Lab #5: Finding repeats in DNA sequences using a Web-server
- Lab #6: Playing with FoldIt!
- Lab #7: Sequence Logos with Proce55ing
- Lab #8: Sequence Logos on the Web
- Lab #9: Where/How do I get proteins?
- Lab #10: Finding the secondary structure of a protein
Miscellaneous Links and Resources
- E Coli sequence in FASTA format
- A good tutorial File:ProcessingTutorial.pdf on Processing by Josh Nimoy, from NYU.
