Difference between revisions of "Csc334 DT Notes"
| Line 7: | Line 7: | ||
** Phylogenetic and classification methods | ** Phylogenetic and classification methods | ||
** Display tools | ** Display tools | ||
| + | |||
* Some bioinformatic tasks (could be labs) | * Some bioinformatic tasks (could be labs) | ||
| Line 16: | Line 17: | ||
** finding orthologous and paralogous genes | ** finding orthologous and paralogous genes | ||
** finding repeats | ** finding repeats | ||
| + | |||
| + | * where to find protein sequences? | ||
| + | ** PubMed, but can be confusing | ||
| + | ** ExPASy (created by Aimos Baroch) | ||
| + | |||
| + | * The FASTA Format: | ||
| + | > description line | ||
| + | ACGTTTAGGGCTTTAAAA | ||
| + | AAAGGGTCGATTATTTTA | ||
| + | |||
| + | |||
| + | * ? | ||
Revision as of 18:20, 7 July 2008
Notes taken by DT, Summer of 08
Source Bioinformatics for Dummies
- Bioinformatic tools (p. 27) mainly fit in 3 categories
- Sequence alignment
- Phylogenetic and classification methods
- Display tools
- Some bioinformatic tasks (could be labs)
- finding which genomes are available
- analyzing sequences in relation to specific genomes
- displaying genomes
- ORFing: parsing a microbial genome sequence
- GenScan: parsing a eukaryotic genome sequence
- finding orthologous and paralogous genes
- finding repeats
- where to find protein sequences?
- PubMed, but can be confusing
- ExPASy (created by Aimos Baroch)
- The FASTA Format:
> description line ACGTTTAGGGCTTTAAAA AAAGGGTCGATTATTTTA
- ?
