Difference between revisions of "Csc334 DT lab Ideas"
(New page: * BLAST lab: take a sequence (protein and/or DNA) and find other sequences that are close to it * given N sequences that overlap, find the best way in which they form a long sequence. Use...) |
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* BLAST lab: take a sequence (protein and/or DNA) and find other sequences that are close to it | * BLAST lab: take a sequence (protein and/or DNA) and find other sequences that are close to it | ||
* given N sequences that overlap, find the best way in which they form a long sequence. Use processing and a circle approach to represent them | * given N sequences that overlap, find the best way in which they form a long sequence. Use processing and a circle approach to represent them | ||
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** from output of blast | ** from output of blast | ||
** from result of computing local alignment | ** from result of computing local alignment | ||
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Revision as of 16:09, 21 July 2008
- BLAST lab: take a sequence (protein and/or DNA) and find other sequences that are close to it
- given N sequences that overlap, find the best way in which they form a long sequence. Use processing and a circle approach to represent them
- display alignment of two sequences
- limit to end to end overlapping
- from output of blast
- from result of computing local alignment
