Difference between revisions of "Csc334 DT lab Ideas"
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| + | * given a series of nucleotides, find and display the 6 reading frames | ||
| + | * finding repeats within a sequence | ||
* BLAST lab: take a sequence (protein and/or DNA) and find other sequences that are close to it | * BLAST lab: take a sequence (protein and/or DNA) and find other sequences that are close to it | ||
* given N sequences that overlap, find the best way in which they form a long sequence. Use processing and a circle approach to represent them | * given N sequences that overlap, find the best way in which they form a long sequence. Use processing and a circle approach to represent them | ||
Revision as of 16:16, 21 July 2008
- given a series of nucleotides, find and display the 6 reading frames
- finding repeats within a sequence
- BLAST lab: take a sequence (protein and/or DNA) and find other sequences that are close to it
- given N sequences that overlap, find the best way in which they form a long sequence. Use processing and a circle approach to represent them
- display alignment of two sequences
- limit to end to end overlapping
- from output of blast
- from result of computing local alignment
