Difference between revisions of "CSC334 Lab2"
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| − | * Find the Sequence Information at the bottom of the page, and select P06968 in FASTA format for the display. You should get something like this: | + | * The '''Accession Number''' of the protein found is '''P06968'''. Its name in the Swiss-Prot database is DUT_ECOLI, but it is also known as EC 3.6.1.23, or dUTPase, or dUTP pyrophospatase. |
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| + | * Find the '''Sequence Information''' at the bottom of the page, and select '''P06968 in FASTA''' format for the display. You should get something like this: | ||
>sp|P06968|DUT_ECOLI Deoxyuridine 5'-triphosphate nucleotidohydrolase OS=Escherichia coli (strain K12) GN=dut PE=1 SV=1 | >sp|P06968|DUT_ECOLI Deoxyuridine 5'-triphosphate nucleotidohydrolase OS=Escherichia coli (strain K12) GN=dut PE=1 SV=1 | ||
Revision as of 17:10, 21 July 2008
Retrieving Protein sequences from ExPASy
ExPASy is a database of proteins created by a pioneer of bioinformatics: Amos Bairoch
Methodology
- Point your browser to www.expasy.org/sprot/ and enter DUT_ECOLI in the search bar and click on Go:
- The Accession Number of the protein found is P06968. Its name in the Swiss-Prot database is DUT_ECOLI, but it is also known as EC 3.6.1.23, or dUTPase, or dUTP pyrophospatase.
- Find the Sequence Information at the bottom of the page, and select P06968 in FASTA format for the display. You should get something like this:
>sp|P06968|DUT_ECOLI Deoxyuridine 5'-triphosphate nucleotidohydrolase OS=Escherichia coli (strain K12) GN=dut PE=1 SV=1 MKKIDVKILDPRVGKEFPLPTYATSGSAGLDLRACLNDAVELAPGDTTLVPTGLAIHIAD PSLAAMMLPRSGLGHKHGIVLGNLVGLIDSDYQGQLMISVWNRGQDSFTIQPGERIAQMI FVPVVQAEFNLVEDFDATDRGEGGFGHSGRQ
