Difference between revisions of "CSC334 Lab2"
| Line 5: | Line 5: | ||
==Methodology== | ==Methodology== | ||
| − | * Point your browser to [http://www.expasy.org/sprot/ www.expasy.org/sprot/] and enter DUT_ECOLI in the search bar: | + | * Point your browser to [http://www.expasy.org/sprot/ www.expasy.org/sprot/] and enter''' DUT_ECOLI''' in the search bar and click on '''Go''': |
<br /> | <br /> | ||
[[Image:CSC334_Lab2_1.png | thumb | 300 px | frame | Figure 1]] | [[Image:CSC334_Lab2_1.png | thumb | 300 px | frame | Figure 1]] | ||
| + | |||
| + | * Find the Sequence Information at the bottom of the page, and select P06968 in FASTA format for the display. You should get something like this: | ||
| + | |||
| + | >sp|P06968|DUT_ECOLI Deoxyuridine 5'-triphosphate nucleotidohydrolase OS=Escherichia coli (strain K12) GN=dut PE=1 SV=1 | ||
| + | MKKIDVKILDPRVGKEFPLPTYATSGSAGLDLRACLNDAVELAPGDTTLVPTGLAIHIAD | ||
| + | PSLAAMMLPRSGLGHKHGIVLGNLVGLIDSDYQGQLMISVWNRGQDSFTIQPGERIAQMI | ||
| + | FVPVVQAEFNLVEDFDATDRGEGGFGHSGRQ | ||
Revision as of 17:03, 21 July 2008
Retrieving Protein sequences from ExPASy
ExPASy is a database of proteins created by a pioneer of bioinformatics: Amos Bairoch
Methodology
- Point your browser to www.expasy.org/sprot/ and enter DUT_ECOLI in the search bar and click on Go:
- Find the Sequence Information at the bottom of the page, and select P06968 in FASTA format for the display. You should get something like this:
>sp|P06968|DUT_ECOLI Deoxyuridine 5'-triphosphate nucleotidohydrolase OS=Escherichia coli (strain K12) GN=dut PE=1 SV=1 MKKIDVKILDPRVGKEFPLPTYATSGSAGLDLRACLNDAVELAPGDTTLVPTGLAIHIAD PSLAAMMLPRSGLGHKHGIVLGNLVGLIDSDYQGQLMISVWNRGQDSFTIQPGERIAQMI FVPVVQAEFNLVEDFDATDRGEGGFGHSGRQ
