Difference between revisions of "CSC352 Class Page 2010"

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__TOC__
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<br />
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<br />
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<center>[[CSC352 | Main Page]] | [[CSC352_Syllabus | Syllabus]] | [[CSC352_Class_Page | Schedule]] |
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[[CSC352 Resources | Links &amp; Resources]]</center>
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<br />
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<br />
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=Hadoop-Related=
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* [http://cs.smith.edu/classwiki/index.php/CSC352_Hadoop_Howto_%26_FAQ Hadoop FAQ Page]
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* [http://maven.smith.edu/~thiebaut/showhadoopip.php Hadoop IPs]
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=Projects=
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* [[CSC352 Project 1 | Project 1]]: Started Feb 16, due March 2nd. A [[CSC352 Project1 Solution|good example of a solution]].
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* [[CSC352 Project 2 | Project 2]]: Deals with the Xgrid.  A [[CSC352 Project 2 Solution | collection of good proposed solutions]].
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* [[CSC352 Project 3 | Project 3]] Deals with processing Wikipedia pages on Hadoop/MapReduce.
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* '''Project 4 has officially started on 1/26/10! and is now Over.'''  Find its shared wiki page [http://cs.smith.edu/classwiki/index.php/CSC352_Page#Projects here]!  Congratulations to the class for setting up the individual nodes of the first Smith Cloud Cluster!
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[[File:SmilingPython.png | 100px | right]]
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=Python Threads=
 
=Python Threads=
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{| style="width:100%" border="1"
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|- style="background:#ffdead;"
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|'''Week''' || '''Topics''' || '''Reading'''
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<!-- ================================================================== -->
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|-valign="top"
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|width="15%"| Week 1 <br /> 1/25
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|width="60%"|
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* '''Tuesday'''
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** Introduce Syllabus
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** Interrupts
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[[Image:pogoplug.jpg | right]]
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* '''Thursday'''
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** The [[PogoPlug]]...
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** The [http://www.apple.com/ipad/ iPad]...
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** Python Review
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*** [[NQueens.py | NQueens.py]]: a python program to find the first solution for ''N'' queens on an ''N''xN board.
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----
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*  [http://cs.smith.edu/classwiki/index.php/CSC352_Page Lecture Notes]
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||
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;Read:
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* What is a Thread? [http://en.wikipedia.org/wiki/Thread_(computer_science)]
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* What is a Processes? [http://en.wikipedia.org/wiki/Process_(computing)]
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;Reference material for when we start programming:
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* [http://www.python.org/doc/2.5.2/lib/thread-objects.html Python.org's page] on Thread Objects.  It's the reference, but is not always crystal clear...
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* [http://linuxgazette.net/107/pai.html Linux Gazette Article] on Python Threads.  Good overall introduction.
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* [http://heather.cs.ucdavis.edu/~matloff/Python/PyThreads.pdf Norm Matloff's] introduction to Python Threads.  More details, less easy to follow.
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;For Discussion next Tuesday
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*read  the paper by  Asanovic K. ''et al'', The Landscape of Parallel Computing Research: A View from Berkeley.
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<!-- ================================================================== -->
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|- style="background:#eeeeff" valign="top"
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| Week 2 <br /> 2/1<br />
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||
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* '''Tuesday'''
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** discussion (prepare a 1-page summary) of the paper by  Asanovic K. ''et al'', [http://www.eecs.berkeley.edu/Pubs/TechRpts/2006/EECS-2006-183.pdf The Landscape of Parallel Computing Research: A View from Berkeley], Dec. 2006. ([[media:LandscapeParallelProcessingBerkeley1206.pdf|cached copy]])
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* '''Thursday'''
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** Python
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*** [[classExample1.py | classExample1.py ]]
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*** [[classExample2.py | classExample2.py ]]
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*** [[classExample3.py | classExample3.py ]]
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*** [[serialPing.py | serialPing.py ]]
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** Python Threads
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*** [[threadedPing.py | threadedPing.py ]]: a threaded solution to the serial ping program
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*** [[ThreadedNQueens.py | ThreadedNQueens.py ]]: a threaded solution to the N-Queens program
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----
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* [[CSC352 Homework 1 | Homework #1]]
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*  [http://cs.smith.edu/classwiki/index.php/CSC352_Page Lecture Notes]
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||
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&nbsp;
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* Make sure to read Norman Matloff's tutorial on threads in the [[CSC352_Resources#Documentation_on_Python_Threads|
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section on Python]] on the [[CSC352_Resources | Resource]] Page.
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* Also, don't hesitate to check [http://python.org Python.org] for information on threads.
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<!-- ================================================================== -->
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|- style="background:#ffffff" valign="top"
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| Week 3 <br /> 2/8 <br />
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||
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* '''Tuesday'''
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** An experiment with Control-C...
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** Sharing in shared memory
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*** the problem
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*** atomicity of operations
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*** semaphores
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**** fair
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**** safe
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**** live
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*** Python locks
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*** examples:
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**** [[CS352_threadedpingWithLocks.py | threadedPingWithLocks.py]]
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**** [[CS352_threadedpingWithSemaphores.py | threadedPingWithSemaphores.py]]
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* '''Thursday'''
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** Discussion: "Why Von Neumann?"
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** Continuation of Shared Memory and Sharing
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*** Python Queues
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**** [[CS352_threadedpingWithQueues.py | threadedPingWithQueues.py]]
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** Some [[CSC352 Notes on the Python GIL| notes]] on Python and treads
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** An alternative to Threading: [http://docs.python.org/library/multiprocessing.html Multiprocessing]
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*** Available with Python 2.6 and up only
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*** [[CSC352_multiprocessingNQueens.py | multiprocessingNQueens.py]]
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*** [[CSC352 Comparison threading to multiprocessing| Comparison]] of the two methods
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** Performance measures
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*** Speedup
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*** Execution time
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*** Processor utilization
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*** Processor efficiency
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*** Processor efficacy
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** Guidlines for presenting research papers
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** Deadlocks
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----
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* [[CSC352 Homework 2 | Homework #2]], [[CSC352 Homework 2 Solution 1 | Solution 1]] and [[CSC352 Homework 2 Solution 2 | Solution 2 ]]
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*  [http://cs.smith.edu/classwiki/index.php/CSC352_Page Lecture Notes]
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||
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* [http://maven.smith.edu/~thiebaut/transputer/chapter8/chap8-1.html Measuring Performance]
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* [http://insidehpc.com/2010/01/05/sun-video-tutorial-optimizing-performance-in-parallel-processing/ Video] from Sun Microsystems on parallelizing applications and  improving their performance (19 minutes)
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* [http://en.wikipedia.org/wiki/Deadlock Deadlocks]
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* [http://www.python.org/dev/peps/pep-0371/ PEP 371] ([[Media:Python_PEP0371.pdf|cached copy]])
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<!-- ================================================================== -->
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|- style="background:#eeeeff" valign="top"
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| Week 4 <br /> 2/15 <br />
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||
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* '''Tuesday'''
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** Discusion of [[media:XenAndTheArtOfVirtualization_3.pdf | Xen and the Art of Virtualization]] (Presentation by '''Le''')
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*** One person presents
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*** Everybody else submits a 1-page summary in 3 parts.
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** Review of HW #1
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** A visit of the XGrid system ([http://www.facebook.com/pages/Northampton-MA/Computer-Science-Smith-College/264041891883?ref=ts Photos])
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* '''Thursday'''
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** Python Q&A
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** Amdahl's Law
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** Deadlocks: the main rule
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** [[How to Read Technical Papers]]
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** Summarize [[Media:TechnologyBitsNYT02162010.pdf| this!]]
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** Good background information: [http://en.wikipedia.org/wiki/Message_Passing_Interface#Example_program MPI]
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----
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*  [http://cs.smith.edu/classwiki/index.php/CSC352_Page Lecture Notes]
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||
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* Additional information on Xen can be found in  Mauer, R., [http://www.linuxjournal.com/article/8812 Xen Virtualization and Linux Clustering], [http://www.linuxjournal.com Linux Journal] January 12th, 2006.
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* A [http://blip.tv/file/2232410 video] on the Python GIL discovered by Diana.
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* A [http://oblong.com/ video] by Oblong Industries (in reference to the NYT article to summarize)
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|}
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[[File:XgridLogo.png| right | 100px | link=http://rocinante.smith.edu/ganglia/]]
  
 
=XGrid Programming=
 
=XGrid Programming=
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{| style="width:100%" border="1"
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|- style="background:#ffdead;"
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|'''Week''' || '''Topics''' || '''Reading'''
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<!-- ================================================================== -->
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|-valign="top"
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|width="15%"| Week 5 <br /> 
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|width="60%"|
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* '''Tuesday'''
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** [[CSC352 Introduction to the Projects | Introduction to the next projects]]
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** [http://data.scl.utah.edu/fmi/xsl/stream/details.xsl?-recid=104&a::v=2212a4Eaya A Video presentation of the XGrid] (watch first 10 minutes)
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** [[XGrid Tutorial Part 1: Monte Carlo | Tutorial/Lab #1: Monte Carlo on the XGrid]]
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* '''Thursday''':
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** Presentation and discussion of [http://www.cs.wisc.edu/multifacet/papers/ieeecomputer08_amdahl_multicore.pdf Amdahl's Law in the Multicore Era], Mark Hill and Michael Marty, IEEE Computer, July 2008, and accompanying [http://www.cs.wisc.edu/multifacet/amdahl/ dynamic graph]. ([[Media:ieeecomputer08_amdahl_multicore.pdf |cached copy]])
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** [[XGrid Tutorial Part 1: Monte Carlo | Continuation of the Xgrid Monte-Carlo tutorial]]
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----
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*  [http://cs.smith.edu/classwiki/index.php/CSC352_Page Lecture Notes]
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||
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* Apple's [http://developer.apple.com/mac/library/documentation/MacOSXServer/Conceptual/Xgrid_Programming_Guide/Introduction/Introduction.html XGrid Introduction]
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<!-- ================================================================== -->
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|- style="background:#eeeeff" valign="top"
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| Week 6 <br /> <br />
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||
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* '''Tuesday'''
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** Presentation of Projects #2 and #3
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*** [[CSC352_Resources#Videos:_Big_Data_and_Analytics | Videos]]
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*** Pres by DT
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**** [http://jonudell.net/udell/gems/umlaut/umlaut.html John Udell's capture of the page ''Heavy Metal Umlaut'']
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**** [http://meta.wikimedia.org/wiki/Research Wikipedia Research Projects]
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*** [[CSC352_Project_2 | Intro to Projects #2 and #3]] ([http://cs.smith.edu/~thiebaut/freevideos/BigData2.swf  presentation])
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* '''Thursday'''
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** Canceled by DT
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----
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*  [http://cs.smith.edu/classwiki/index.php/CSC352_Page Lecture Notes]
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 +
||
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* Read  Hughes, B., [http://citeseerx.ist.psu.edu/viewdoc/download?doi=10.1.1.60.7248&rep=rep1&type=pdf Building Computational Grids with Apple's XGrid Middleware],  ''ACM International Conference Proceeding Series'', Vol. 167, Hobart, Tasmania, Australia, 2006. For next Tuesday.
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<!-- ================================================================== -->
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|- style="background:#ffffff" valign="top"
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| Week 7 <br />  <br />
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||
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* '''Tuesday'''
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** Presentation and discussion of  [http://citeseerx.ist.psu.edu/viewdoc/download?doi=10.1.1.60.7248&rep=rep1&type=pdf Building Computational Grids with Apple's XGrid Middleware], by Hughes, B. (''ACM International Conference Proceeding Series'', Vol. 167, Hobart, Tasmania, Australia, 2006.)  ([[media:buildingComputationalGrids.pdf|cached copy]])
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** Define Homework #3
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** Guidelines for projects. ([http://cs.smith.edu/~thiebaut/freevideos/WhatsInAProject.swf Presentation]) (We stopped on the bell-curve).
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* '''Thursday'''
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** Guidelines for projects. ([http://cs.smith.edu/~thiebaut/freevideos/WhatsInAProject.swf Presentation])
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** [[XGrid Tutorial Part 2: Processing Wikipedia Pages | XGrid Lab 2]]
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** Scheduling
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*** Processor Scheduling (OS)
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*** Multiprocessor Scheduling
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*** XGrid Scheduling
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----
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* [[CSC352 Homework 3 | Homework #3 ]] and its [[CSC352 Homework 3 Solution | solution programs]].
 +
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*  [http://cs.smith.edu/classwiki/index.php/CSC352_Page Lecture Notes]
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||
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&nbsp;
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<!-- ================================================================== -->
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|- style="background:#eeeeff" valign="top"
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| &nbsp; <br />  <br />
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||
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<center>[[Image:SpringBreak.gif |  150px]]</center>
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||
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&nbsp;
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<!-- ================================================================== -->
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|- style="background:#ffffff" valign="top"
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| Week 8 <br />  <br />
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||
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* '''Tuesday'''
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** Sign-up for paper presentations [http://cs.smith.edu/classwiki/index.php/CSC352_Sign-Up_Sheet_for_Paper_Presentations here]!
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** Class participation on the decomposition of Homework 3/Project 2 (the serial part)
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* '''Thursday'''
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** Continuation of decomposition of Homework 3/Project 2 (the parallel part)
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** [[XGrid Tutorial Part 3: Monte Carlo on the Science Center XGrid | XGrid Lab 3]]: running jobs on the Science Center XGrid.
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 +
----
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*  [http://cs.smith.edu/classwiki/index.php/CSC352_Page Lecture Notes]
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||
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&nbsp;
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|}
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[[File:HadoopCartoon.png|right|100px]]
  
 
=Cloud Computing=
 
=Cloud Computing=
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{| style="width:100%" border="1"
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|- style="background:#ffdead;"
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|'''Week''' || '''Topics''' || '''Reading'''
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<!-- ================================================================== -->
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|-valign="top"
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|width="15%"| Week 9 <br /> 
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|width="60%"|
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* '''Tuesday'''
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** Presentation of [http://labs.google.com/papers/mapreduce-osdi04.pdf MapReduce: Simplified Data Processing on Large Clusters] (Yang)
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** [[CSC352 MapReduce/Hadoop Class Notes | Introduction to MapReduce/Hadoop]] (We stopped at Section 4).
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* '''Thursday'''
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** Continuation of [[CSC352 MapReduce/Hadoop Class Notes | Introduction to MapReduce/Hadoop]] and [[Hadoop_Tutorial_1_--_Running_WordCount | Tutorial #1]], [[Hadoop_Tutorial_2_--_Running_WordCount_in_Python | Tutorial #2]]
 +
 +
----
 +
*  [http://cs.smith.edu/classwiki/index.php/CSC352_Page Lecture Notes]
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* [http://cs.smith.edu/classwiki/index.php/CSC352_Hadoop_Howto_%26_FAQ  Hadoop Howtos and FAQs]
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||
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[[File:HadoopOReilly.jpg | 70px | right]]
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* [http://hadoop.apache.org/common/docs/current/mapred_tutorial.html Map-Reduce tutorial] from apache.org: a must-read!
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* [http://developer.yahoo.com/hadoop/tutorial/module4.html Map-Reduce Basics] from Yahoo.com: another must-read!
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* Section 6 in Tom White's ''Hadoop, the Definitive Guide'', available on [http://books.google.com/books?id=bKPEwR-Pt6EC&printsec=frontcover&dq=hadoop+definitive+guide&source=bl&ots=kOdw-xf9Gg&sig=GyHDzyATSbMVcPysVbSAQKuhv58&hl=en&ei=YJ-0S6HSOIS0lQfm3u1q&sa=X&oi=book_result&ct=result&resnum=6&ved=0CB0Q6AEwBQ#v=onepage&q=&f=false Google Books].
 +
<!-- ================================================================== -->
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|- style="background:#eeeeff" valign="top"
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| Week 10 <br /> <br />
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||
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[[Image:CSC352HadoopPerformanceMachineLearning.png| right|150px]]
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* '''Tuesday'''
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** Presentation of [http://www.icsi.berkeley.edu/~arlo/publications/gillick_cs262a_proj.pdf MapReduce: Distributed Computing for Machine Learning]
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** Continuation of [[CSC352 MapReduce/Hadoop Class Notes | Introduction to MapReduce/Hadoop]]
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*** [[Hadoop_Tutorial_1_--_Running_WordCount | Tutorial #1]],
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*** [[Hadoop_Tutorial_1_--_Running_WordCount#Analyzing_the_Hadoop_Logs | Tutorial #1: output logs]]
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***  [[Hadoop_Tutorial_1.1_--_Generating_Task_Timelines | Tutorial #1.1: Task Timelines]]
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[[Image:WrongTaskTimeline.png| 200px|right]]
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* '''Thursday'''
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** Question of the day: What's wrong with this picture?
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** Continuation of [[CSC352 MapReduce/Hadoop Class Notes | Introduction to MapReduce/Hadoop]]
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** Lab for today:
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*** Compare WordCount on 1 vs WordCount on 6 [[Hadoop_Tutorial_1_--_Running_WordCount#Moment_of_Truth:_Compare_5-PC_Hadoop_cluster_to_1_Linux_PC | Section 5 of Tutorial 1]]
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*** Create your own version of the Java WordCount program [[Hadoop_Tutorial_1_--_Running_WordCount#Running_Your_Own_Version_of_WordCount.java | Section 4 of Tutorial 1]]
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*** Create your own Counters [[Hadoop_Tutorial_1_--_Running_WordCount#Counters | Section 6 of Tutorial 1]]: count Buck!
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*** Generate Timelines [[Hadoop_Tutorial_1.1_--_Generating_Task_Timelines | Tutorial 1.1]]
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*** Counting words in Python [[Hadoop_Tutorial_2_--_Running_WordCount_in_Python | Tutorial 2]]
 +
----
 +
*  [http://cs.smith.edu/classwiki/index.php/CSC352_Page Lecture Notes]
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* [[CSC352 Homework 4 | Homework #4]] and [[CSC352 Homework 4 Solution | a solution]].
 +
||
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&nbsp;
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<!-- ================================================================== -->
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|- style="background:#ffffff" valign="top"
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| Week 11 <br />  <br />
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||
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* '''Tuesday'''
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** Presentation of [http://portal.acm.org/ft_gateway.cfm?id=1629198&type=pdf&coll=GUIDE&dl=GUIDE&CFID=82739837&CFTOKEN=94683258 MapReduce: A Flexible Data Processing Tool] ([[media:MapReduceFlexibleDataProcessingTool.pdf | cached copy]])
 +
** Compare with  Paulson, Rasin, Abadi, DeWitt, Madden, and Stonebraker's paper [[Media:ComparisonOfApproachesToLargeScaleDataAnalysis.pdf |A Comparison of Approaches to Large Scale Data-Analysis]], SIGMOD-09, June 2009.
 +
* '''Thursday'''
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** [http://en.wikipedia.org/wiki/Hypertable Hypertable] is an open-source project parallel to Google's BigTable...
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** Art vs Science...
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** Some preliminary thinking about the final project...
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** [[Hadoop_Tutorial_2.1_--_Streaming_XML_Files | Streaming whole files]]
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** [[Hadoop Tutorial 2.2 -- Running C++ Programs on Hadoop | WordCount in C++]]
 +
**  Visualizations of Hadoop Data Transfers, from the U. of Nebraska ([http://www.google.com/search?q=university+of+Nebraska+hadoop+visualization&hl=en&safe=off&tbs=vid:1&tbo=u&ei=oKO4S6GMCoH7lwfq88SXCg&sa=X&oi=video_result_group&ct=title&resnum=1&ved=0CBEQqwQwAA more videos])
 +
<br /><br /><center><videoflash>qoBoEzOkeDQ</videoflash></center><br /><br />
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** Monitoring a Cluster of Computers as a school of fish (U. Nebraska)
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<br /><br /><center><videoflash>LM1j_8sWSEk</videoflash></center><br /><br />
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** The evolution of Hadoop (Code-Swarm)
 +
<br /><br /><center><videoflash type="vimeo">2513321</videoflash></center><br /><br />
  
=References &amp; Bibliography=
+
----
 +
*  [http://cs.smith.edu/classwiki/index.php/CSC352_Page Lecture Notes]
 +
* A [[CSC352 Project 2 Solution | solution]] for Project 2 has been posted!
 +
||
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* [http://developer.yahoo.com/hadoop/tutorial/index.html Hadoop Tutorial from Yahoo Developer Network (YDN)]
 +
&nbsp;  
  
==Python==
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<!-- ================================================================== -->
* [http://heather.cs.ucdavis.edu/~matloff/Python/PyThreads.pdf Norman Matloff and Francis Hsu's Tutorial] on Python Threads (University of California, Davis) ([[media:matlof_PythonTutorial.pdf|cached copy]])
+
|- style="background:#eeeeff" valign="top"
* [http://linuxgazette.net/107/pai.html Understanding Threading in Python], Krishna G Pai, Linux Gazette, Oct. 2004
+
| Week 12 <br />  <br />
* [http://www.python.org/doc/2.3.5/lib/thread-objects.html Thread Objects] from [http://www.python.org Python.Org]
+
||
 +
* '''Tuesday'''
 +
** Presentation of [http://www.eecs.berkeley.edu/Pubs/TechRpts/2009/EECS-2009-28.pdf Above the Clouds: A Berkeley View of Cloud Computing], Part I
 +
** [[Hadoop_Tutorial_3_--_Hadoop_on_Amazon_AWS | Signing on to Amazon AWS]]
 +
** [[Hadoop_Tutorial_3.1_--_Using_Amazon%27s_WordCount_program | Uploading data to AWS and counting words]]
 +
** [[Hadoop_Tutorial_3.2_--_Using_Your_Own_WordCount_program | Word-counting using Streaming Python on AWS]]
 +
** [[Hadoop_Tutorial_3.3_--_How_Much%3F | Costs of maintaining a Hadoop cluster on AWS]]
 +
* '''Thursday'''
 +
** Continuation of the AWS labs
 +
** [[Hadoop_Tutorial_4:_Start_an_EC2_Instance | Starting an EC2 instance on AWS]]
 +
----
 +
* [http://cs.smith.edu/classwiki/index.php/CSC352_Page Lecture Notes]
 +
||
 +
&nbsp;
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<!-- ================================================================== -->
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|- style="background:#ffffff" valign="top"
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| Week 13 <br />  <br />
 +
||
 +
* '''Tuesday'''
 +
** Presentation of [http://www.eecs.berkeley.edu/Pubs/TechRpts/2009/EECS-2009-28.pdf Above the Clouds: A Berkeley View of Cloud Computing], Part II
 +
** [[CSC352 Problem of the Day| Problem of the day]]: discussion
 +
** Work on projects
  
==XGrid==
+
* '''Thursday'''
 +
** Presentation of [http://www.hulu.com/watch/116372/cnbc-originals-inside-the-mind-of-google Inside the Mind of Google]
 +
** wrap up
 +
----
 +
*  [http://cs.smith.edu/classwiki/index.php/CSC352_Page Lecture Notes]
 +
||
 +
&nbsp;
  
==Cloud Computing==
+
|}
* Armbrust M, ''et al'', [http://www.eecs.berkeley.edu/Pubs/TechRpts/2009/EECS-2009-28.pdf Above the Clouds: A Berkeley View of Cloud Computing], Tech Rep. CB/EECS-2009-28, Feb. 2009 ([[media:AboveTheCloudsBerkeley.pdf|cached copy]])
 
  
=Test area=
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=Selected Solutions for papers, homework, or projects=
  
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* [[Media:Amdahls_Law_in_the_Multicore_Era.pdf | Amdahl's Law in the Multicore Era]] summary
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* [[CSC352 Project1 Solution | Selected Solutions for Project 1]]
  
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[[Category:CSC352]][[Category:Class]][[Category:Schedule]]

Latest revision as of 11:22, 9 August 2013



Main Page | Syllabus | Schedule | Links & Resources



Hadoop-Related

Projects

  • Project 4 has officially started on 1/26/10! and is now Over. Find its shared wiki page here! Congratulations to the class for setting up the individual nodes of the first Smith Cloud Cluster!
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Python Threads

Week Topics Reading
Week 1
1/25
  • Tuesday
    • Introduce Syllabus
    • Interrupts
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  • Thursday
    • The PogoPlug...
    • The iPad...
    • Python Review
      • NQueens.py: a python program to find the first solution for N queens on an NxN board.

Read
  • What is a Thread? [1]
  • What is a Processes? [2]
Reference material for when we start programming
For Discussion next Tuesday
  • read the paper by Asanovic K. et al, The Landscape of Parallel Computing Research: A View from Berkeley.
Week 2
2/1

 

Week 3
2/8

Week 4
2/15


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XGrid Programming

Week Topics Reading
Week 5

Week 6


Week 7


 

 

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Week 8

  • Tuesday
    • Sign-up for paper presentations here!
    • Class participation on the decomposition of Homework 3/Project 2 (the serial part)
  • Thursday
    • Continuation of decomposition of Homework 3/Project 2 (the parallel part)
    • XGrid Lab 3: running jobs on the Science Center XGrid.

 


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Cloud Computing

Week Topics Reading
Week 9

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  • Section 6 in Tom White's Hadoop, the Definitive Guide, available on Google Books.
Week 10

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Week 11





    • Monitoring a Cluster of Computers as a school of fish (U. Nebraska)




    • The evolution of Hadoop (Code-Swarm)





 

Week 12


 

Week 13


 

Selected Solutions for papers, homework, or projects